1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atatctactgatctacatctccaattgaatgatgagacatgctatttccctgaatacttctaaaatggtgtaatttaattgattacctcctattgaccagTGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAGAGAAAATTGGCAAGGAAGGTGCTTTTCACAAGCGTTTGAATAGGGAGAA
species | Zea mays |
transcript | GRMZM2G121851_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGTTAAGGACCATCGAGGAGAAT TGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAGEST: gi|211211397|gb|FL246856.1|FL246856
genomic: TTGTGGTTAAGGACCATCGAGGAGAATgtgagtttat ... tattgaccagTGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAG
EST: ACGGGAAGCAAAAACTGAATCATTTGTGGTTAAGGATCATCGAGGAGAAT TGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAG
genomic: ACGGGAAGCAAAAACTGAATCATTTGTGGTTAAGGACCATCGAGGAGAATgtgagtttat ... tattgaccagTGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAG
ttccctgaatacttctaaaatggtgtaatttaattgattacctcctattgaccagTGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAGAGAAAATTGGCAAGGAAGGTGCTTTTCACAAGCGTTTGAATAGGGAGAA
ttacctcct CT-rich tract
tgtaatttaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatctactgatctacatctccaattgaatgatgagacatgctatttccctgaatacttctaaaatggtgtaatttaattgattacctcctattgaccagTGTACAAGAAGCACCACCCACCATTTCTTGAAGATGAAGTCTGGCGCCTAGAGAAAATTGGCAAGGAAGGTGCTTTTCACAAGCGTTTGAATAGGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -tctactg
- - - - - - ctacatc
- - - - - - - - - - - - ttgaatg