1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgggtctttacttgttcgcgttagttgcttttctgagttttgatacaaagcattaacctttttgtgttttgattgtgggccaattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATGGAAAGAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTA
species | Zea mays |
transcript | GRMZM2G121826_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG G----TAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|71772711|gb|DR970638.1|DR970638
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|71302365|gb|DR787300.1|DR787300
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|67034938|gb|CO463471.1|CO463471
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|149012049|gb|EE042465.2|EE042465
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|9952364|gb|BE638947.1|BE638947
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|9952536|gb|BE639119.1|BE639119
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|71299876|gb|DR785964.1|DR785964
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGEST: gi|148982427|gb|EE028311.2|EE028311
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTG
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|149036971|gb|EE155209.2|EE155209
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCCAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATEST: gi|148945740|gb|EC891020.2|EC891020
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
gttttgatacaaagcattaacctttttgtgttttgattgtgggccaattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATGGAAAGAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTA
aattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtctttacttgttcgcgttagttgcttttctgagttttgatacaaagcattaacctttttgtgttttgattgtgggccaattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGATGGAAAGAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT