1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgtttaactccaaattatgtcatgcctcatgcaatgttatcttttattacctggatgattctgacactctttctgctgtttgatgtttctgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
species | Zea mays |
transcript | GRMZM2G121456_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTATCCCCTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|149088220|gb|EE287341.2|EE287341
genomic: TGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: CAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAACTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|88752492|gb|DY536633.1|DY536633
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCGTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTATTTAGTGCTGGGACCAAAGEST: gi|20208074|gb|BQ134163.1|BQ134163
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|32942454|gb|CF047273.1|CF047273
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCCGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|71307771|gb|DR790104.1|DR790104
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|149043157|gb|EE047302.2|EE047302
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|74237087|gb|DT645001.1|DT645001
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGEST: gi|76012849|gb|DT940019.1|DT940019
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
EST: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAG CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
genomic: AAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGgtactgaaca ... tgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
tattacctggatgattctgacactctttctgctgtttgatgtttctgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
tttctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttaactccaaattatgtcatgcctcatgcaatgttatcttttattacctggatgattctgacactctttctgctgtttgatgtttctgtttgacagCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - tcatgcc
- - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttc