Skip to another splice site:
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatataaatatatcctttcaagcaagtttaacatctcaagttgcactcactatattactagtgctggtatttttttaaaaaaatttactgtatgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT

Basic information

species Zea mays
transcript GRMZM2G121262_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121262_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 3'ss of exon 3
gtacatataaatatatcctttcaagcaagtttaacatctcaag-ttgcactcactatattactag--tgctggta-tttttttaaaaaaatttactgtatgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT
                            |||  | || | ||  || |||    | || | ||||  | ||| || || ||||| |||     ||| | ||||   ||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||
----------------------------gttctaaatattaatcttacaccgtttctagtgctaggattctgttaattcttttataaattagaactttttgctgtgcagTCATTTGCAAGGTATGTTCAACCGGACAATAAGGTTGCTGGAGGCAGGAATCAAGCCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211167737|gb|FL381616.1|FL381616
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|88749646|gb|DY533787.1|DY533787
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211100122|gb|FL400844.1|FL400844
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211223590|gb|FL394143.1|FL394143
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211425800|gb|FL370226.1|FL370226
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211174986|gb|FL426224.1|FL426224
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATG
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATG
EST: gi|28568845|gb|CB280720.1|CB280720
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|148983038|gb|EE028944.2|EE028944
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211012301|gb|FL429470.1|FL429470
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|26558947|gb|CA831182.1|CA831182
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|30087247|gb|CB885455.1|CB885455
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211017547|gb|FL416072.1|FL416072
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211373800|gb|FL383593.1|FL383593
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211381883|gb|FL378666.1|FL378666
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211207489|gb|FL412293.1|FL412293
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGANTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|50328745|gb|CO523871.1|CO523871
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|148945123|gb|EC890320.2|EC890320
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211150723|gb|FL424954.1|FL424954
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|78117503|gb|DV535890.1|DV535890
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|5566733|gb|AI881599.1|AI881599
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|148985935|gb|EE029848.2|EE029848
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|89763728|gb|DY690807.1|DY690807
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|22473079|gb|BU037559.1|BU037559
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211042507|gb|FL401127.1|FL401127
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211212604|gb|FL411845.1|FL411845
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211025441|gb|FL424759.1|FL424759
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGSAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|31405508|gb|CD484240.1|CD484240
EST:     GGAAGGACAGGCATGGAAACTCTTTTTTATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211153107|gb|FL147726.1|FL147726
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211245220|gb|FL396976.1|FL396976
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211330557|gb|FL419745.1|FL419745
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|87156101|gb|DY400890.1|DY400890
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211437408|gb|FL427299.1|FL427299
EST:     GGAAGGACAGGTATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|71444731|gb|DR825781.1|DR825781
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211159822|gb|FL401300.1|FL401300
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211154932|gb|FL392729.1|FL392729
EST:     GCMAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211350574|gb|FL379660.1|FL379660
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211063788|gb|FL421781.1|FL421781
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211299165|gb|FL411033.1|FL411033
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|74235361|gb|DT643275.1|DT643275
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211428990|gb|FL402811.1|FL402811
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211017548|gb|FL416073.1|FL416073
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211500136|gb|FL426014.1|FL426014
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|9952839|gb|BE639422.1|BE639422
EST:     GAAGGACTGGTCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GAAGGACAGG-CATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211027563|gb|FL411213.1|FL411213
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGSACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211501768|gb|FL386313.1|FL386313
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211210052|gb|FL412299.1|FL412299
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211431955|gb|FL418480.1|FL418480
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211212177|gb|FL397460.1|FL397460
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211413681|gb|FL415020.1|FL415020
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211269215|gb|FL410577.1|FL410577
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211149118|gb|FL417449.1|FL417449
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|93014006|gb|EB639526.1|EB639526
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211245266|gb|FL399179.1|FL399179
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211496668|gb|FL401564.1|FL401564
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211467040|gb|FL427724.1|FL427724
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|76018920|gb|DT946090.1|DT946090
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|32907157|gb|CF011970.1|CF011970
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|91054792|gb|EB165210.1|EB165210
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211073425|gb|FL369872.1|FL369872
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211518748|gb|FL408140.1|FL408140
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCAGTTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAA
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCA-TTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAA
EST: gi|211145693|gb|FL374594.1|FL374594
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211095527|gb|FL420438.1|FL420438
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211541786|gb|FL372764.1|FL372764
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211017549|gb|FL416074.1|FL416074
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211092307|gb|FL381165.1|FL381165
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
EST: gi|211109386|gb|FL406905.1|FL406905
EST:     GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAG                         TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT
genomic: GGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 348

ATTGTAGTTGGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 75

ATTGTAGTTGGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 89

ATTGTAGTTGGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 41

ATTGTAGTTGGAAGGACAGGCATGGAAACTCTCACAAATGAAGCTGGTGAAGTCACTAGgtacatataa ... tgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactatattactagtgctggtatttttttaaaaaaatttactgtatgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT
 cactcac  putative branch site (score: 41)
                 tggtatttttttaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatataaatatatcctttcaagcaagtttaacatctcaagttgcactcactatattactagtgctggtatttttttaaaaaaatttactgtatgctcgtcagTCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG