1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtttcctactatattttgtttcactttctctcaactgtattttaatagtatttgaactattttgaagatcaatctaaaatattttcaccaaaacacaattttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATATAGATGCCGCAATGATAAATTTCAAGAATACGAG
species | Zea mays |
transcript | GRMZM2G121022_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATTATGTTCTGTAAAAGGAGATTCCAGGNACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|148975996|gb|EE025851.2|EE025851
genomic: ACAATTATGTTCTGTAAAAGGAGATTCCAGG-ACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|149106635|gb|EE188528.2|EE188528
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|211260538|gb|FL346342.1|FL346342
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|76286956|gb|DV026524.1|DV026524
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|51592489|gb|CV071635.1|CV071635
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: ACAATTATGTTCTGTAAAAGGAGATTCCAAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGEST: gi|67026820|gb|CO455569.1|CO455569
genomic: ACAATTATGTTCTGTAAAAGGAGATTCCA-GGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTG
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATEST: gi|31358954|gb|CD443311.1|CD443311
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
EST: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAG GCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
genomic: CACAATTATGTTCTGTAAAAGGAGATTCCAGGACATCTCTAGAAGCTGAGgtatgtttcc ... tttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAAT
aactattttgaagatcaatctaaaatattttcaccaaaacacaattttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATATAGATGCCGCAATGATAAATTTCAAGAATACGAG
atctaaa putative branch site (score: 347)
ttttttctc putative PPT
aagatcaatctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcctactatattttgtttcactttctctcaactgtattttaatagtatttgaactattttgaagatcaatctaaaatattttcaccaaaacacaattttttctcagGCATATGCTTCATATATGAAGGGTGCTTTGTTTTTTGAGCAAGACAAGAATATAGATGCCGCAATGATAAATTTCAAGAATACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA