1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaattgattttaaactgctagtaaattgatgattatttggattcagctttgcttgaagccacctttaaaaatccttagttgaccgattttgtgctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
species | Zea mays |
transcript | GRMZM2G120876_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAG TTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAGEST: gi|32836655|gb|CD976333.1|CD976333
genomic: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAGgtaaattgat ... gctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
EST: GTGTCAAGCATGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAG TTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAGEST: gi|211538850|gb|FL377090.1|FL377090
genomic: GTGTCAAGCATGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAGgtaaattgat ... gctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
EST: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAG TTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAGEST: gi|211045137|gb|FL385512.1|FL385512
genomic: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAGgtaaattgat ... gctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
EST: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAG TTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATATTTGATTATAA
genomic: TGATATTACGGACAACCTTTCTTTAAAGATAAATGCTCAGgtaaattgat ... gctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAAT-TTTGATTATAA
tttgcttgaagccacctttaaaaatccttagttgaccgattttgtgctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
agttgac putative branch site (score: 572)
tgctctt putative PPT
tttaaaaatcctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgattttaaactgctagtaaattgatgattatttggattcagctttgcttgaagccacctttaaaaatccttagttgaccgattttgtgctcttgcagTTGACAAGTGAGCCCCACTACTCCCAAGGGATGCTGAATTTTGATTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG