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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactatcatcggtgtgattctgtcttgtagagttgctagctcttgatttgtaggaagtggaatatcatgactaatgagatatcttggtattttcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGC

Basic information

species Zea mays
transcript GRMZM2G120175_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120175_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g43790.3 (Oryza sativa), 3'ss of exon 4
--------------------------------------gtaaggactatcatcggtgtgattctgtcttgtagagttgctagctcttgatttgtaggaagtggaatatcatgactaatgagatatcttggtattttcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGC
                                      ||||| |   | ||   |          |||  | |     | | ||||||| |  ||||||||  ||||| ||   | |||||| | |    ||  ||| |||||||||||||| |||||||||| |||||||| ||| | || || || || |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
gtgagaattatcgttttatcatgggtgtgattctgtttgtaagcaaagt-attaattcccggtacccttaaaaaacgatttgttcttgatata-aggaagtg--atatc-tgttaattgagatgtttc--catcatcctttgcagCTTTCTTGCTATATGTTGCTTCAGTTATAGTGGTGGTCTTCGTGCTAGTGTTCCATTTCTCCCCTCTATATGGGCAGTCAAATGTGTTGATCTACACTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5895870|gb|AW037116.1|AW037116
EST:     GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTG                         CTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGT
genomic: GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTGgtaaggacta ... tcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGT
EST: gi|74234883|gb|DT642797.1|DT642797
EST:     GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTG                         CTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGNTGT
genomic: GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTGgtaaggacta ... tcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGT
EST: gi|76281094|gb|DV020662.1|DV020662
EST:     GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTG                         CTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGT
genomic: GCAGGAGATTACTTCAGTTAAGGAAATATGGAACATGGCGACACAACCTGgtaaggacta ... tcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaggaagtggaatatcatgactaatgagatatcttggtattttcccttgcagCTTTCTTGTTATATGTTGCGTCAGTTATTGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGC
                     gactaat  putative branch site (score: 2)
                                        tattttccctt  putative PPT
             aatatcat  TA-rich tract