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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagtgcatttccagccagagaacaatacacaaagctacctttcacaatgtccagatattatgttactctatctgaaccagtatttgtctgctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGATTTTTCTTACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATAT

Basic information

species Zea mays
transcript GRMZM2G119759_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g58700.2 (Oryza sativa), 3'ss of exon 5
tcagtgcatttccagccagagaacaatacacaaagctacctttcacaatgtccagatattatgttact--ctatctgaaccagtatttgtctgctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGATTTTTCTTACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATAT
|   || |  ||  || || || |     | |||  ||  ||| || ||||     |||  | ||  |   |||||||| |  | ||  | | ||||||||||||||| ||||||||||| |||||||||||| | |||||| ||||||  ||||| || |||||||||||||| |||||||| ||| | |||||||| |||
ttgatg-acatctggc-agtgagcctgcaaaaaacttatatttgaccatgttttattatctttttgttaattatctgaatcgattttattttactccaccagATCCACGGCTCACAATGGGCTATGCCCTTCTCCTCGATTAAATGTTGGAGATTTCTCATACAACTTTCTTGTTGGAAAAATCCCACCGTGCTTGAAGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76910135|gb|DV163720.1|DV163720
EST:     TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGG                         ATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA
genomic: TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGGgttggttact ... gctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA
EST: gi|18660681|gb|BM500991.1|BM500991
EST:     TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGG                         G
genomic: TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGGgttggttact ... gctccaccag-
EST: gi|18660681|gb|BM500991.1|BM500991
EST:     TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGG                         G
genomic: TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGGgttggttact ... gctccaccag-
EST: gi|50335670|gb|CO530796.1|CO530796
EST:     TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGG                         ATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA
genomic: TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGGgttggttact ... gctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA
EST: gi|71770669|gb|DR968606.1|DR968606
EST:     TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGG                         ATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA
genomic: TCAATTCCAGGAAGCAATACTGCCAGTTTTTCTCCTGCTTCAAATATTGGgttggttact ... gctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtccagatattatgttactctatctgaaccagtatttgtctgctccaccagATCCACAGCTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGATTTTTCTTACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATAT
                                          tctgctcc  CT-rich tract
          atattatgtta  TA-rich tract