1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...acccaccatatacctgtaatgtgtttactctttatgatttatagcattcacttctgtattattgcttgaatatttcttcttactaagtatatcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|211223364|gb|FL262903.1|FL262903
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAATTCACTGCAAGYGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGEST: gi|76289708|gb|DV029276.1|DV029276
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAG
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|211223367|gb|FL262906.1|FL262906
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAATTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|211225422|gb|FL262911.1|FL262911
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|149000791|gb|EE038015.2|EE038015
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|78093012|gb|DV521386.1|DV521386
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|71330637|gb|DR802090.1|DR802090
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|211223365|gb|FL262904.1|FL262904
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAATTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGGAGCAAGGCACTAAGAAAATGgtagtttata ... atcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
attcacttctgtattattgcttgaatatttcttcttactaagtatatcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
ttcttac putative branch site (score: 224)
aatatttcttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaccatatacctgtaatgtgtttactctttatgatttatagcattcacttctgtattattgcttgaatatttcttcttactaagtatatcaatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- ccaccat
- - - - - -acctgta
- - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga