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...tcataaacagtagtcatcaacatctgtttggtcatctgacaatatgaaaatgtcaaatattaagttatatttttttgtatgtatgtgatttgtcttttagGCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTGCTCAGGATGGGCACACTGTTATCTGTTCGATACACCAGCCAAGAGGTTC
species | Zea mays |
transcript | GRMZM2G119345_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAG GCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTGEST: gi|211452481|gb|FL182655.1|FL182655
genomic: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAGgtattaaact ... tgtcttttagGCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTG
EST: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAG GCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTGEST: gi|32863127|gb|CF002809.1|CF002809
genomic: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAGgtattaaact ... tgtcttttagGCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTG
EST: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAG GCCTTGATGCCTTCCAAGCTGA
genomic: TGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAGgtattaaact ... tgtcttttagGCCTTGATGCCTTCCAAGCTGA
gaaaatgtcaaatattaagttatatttttttgtatgtatgtgatttgtcttttagGCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTGCTCAGGATGGGCACACTGTTATCTGTTCGATACACCAGCCAAGAGGTTC
tttgtctttt CT-rich tract
aaatattaagttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcataaacagtagtcatcaacatctgtttggtcatctgacaatatgaaaatgtcaaatattaagttatatttttttgtatgtatgtgatttgtcttttagGCCTTGATGCCTTCCAAGCTGAGAAGGTCATGGAGACTCTTCGTCAACTTGCTCAGGATGGGCACACTGTTATCTGTTCGATACACCAGCCAAGAGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-cataaaca
- - - - - - - -atcaaca
- - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg