1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatgatggcacacaatattgttcagttgctgacgccattcgttctttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
species | Zea mays |
transcript | GRMZM2G119169_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|29167874|gb|CB411134.1|CB411134
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
ttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
tgttaat putative branch site (score: 3)
acatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatggcacacaatattgttcagttgctgacgccattcgttctttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG