1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaactgattacaattacaacatattgtcatgtggtttattttttgtgtactgttctcctttatctaatagacctaatgtattttactgtgttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGTAACATTAGTGGATAGAG
species | Zea mays |
transcript | GRMZM2G118485_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAG CTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGTEST: gi|211190838|gb|FL445818.1|FL445818
genomic: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAGgtcagtcata ... gttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGT
EST: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAG CTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGTEST: gi|211244451|gb|FL466708.1|FL466708
genomic: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAGgtcagtcata ... gttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGT
EST: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAG CTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGT
genomic: GCAAAGGGAAAGCCATGCATCTGATGTCCATTAGTACTGATCAGTTTGAGgtcagtcata ... gttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGT
gtgtactgttctcctttatctaatagacctaatgtattttactgtgttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGTAACATTAGTGGATAGAG
acctaat putative branch site (score: 51)
ttgtttc putative PPT
taatgtattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaactgattacaattacaacatattgtcatgtggtttattttttgtgtactgttctcctttatctaatagacctaatgtattttactgtgttgtttcagCTGATGTCATAACTGAAGCATGAGCGGTGGTCCCCCAGAATGTTGTCCAGTAACATTAGTGGATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- -actgatt
- - - - - - - - -caacata
- - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt