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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttgagttgcttttacttggctaatatgatttggtatcttttgctgtcctatttgatactgctcctttgttgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAG

Basic information

species Zea mays
transcript GRMZM2G118467_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G36550.1 (Glycine max), 3'ss of exon 3
--------gtaactttgagttgcttttacttggctaatatgatttggtatcttttgctgtcctatttgatactgctcctttgttgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAG
           | |  || ||  | |   ||   |   || ||||  ||  | ||  | |  |  || |      |    ||   |||||||| ||   ||||||   ||   | || ||||| ||||| || ||||| ||||||||||  ||||||||||| |||||||| |||
gttgttacagtattcagatttattatagttttagtctcataatttt-taaatgttattttttttgttaagcggtttatggtgggttcacagGTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAG

upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G15980.2 (Glycine max), 3'ss of exon 3
gtaactttgagttgcttttacttggctaatatgatttggtatcttttgc-tgtcctatttgata--ctgctcctt-tgttgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAG
          |||||  |    |||    | ||||     |  |||    | |  ||  || ||  ||| |  || ||   | |||||||||   ||| ||  | |   | || ||||| ||||| || ||||| ||||||||||  |||||||||||||| |||||||||
-------gttgttgcaatattctggtccttgtgatcataaacttttaaagtattttagatgctaacctgtttattatgggtttacagGTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAG

upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G26620.1 (Glycine max), 3'ss of exon 3
gtaactttgagttgcttttacttg-gctaatatgatttggtatcttttgctgtcctatttgatactgctcctttgttgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAG
||   |   |  | ||  | |||| | | |||   |||   |   ||     |  ||     |  |  |      ||   |||||||||   ||| ||  | |   | || ||||| ||||| || ||||| ||||||||||  |||||||||||||| ||||| |||
gttgttgcaatattctggttcttgtgatcataaactttaaaaatattctagatggtaacctgt-ttattgtgggtttacaacagGTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatttggtatcttttgctgtcctatttgatactgctcctttgttgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAG
                                      ctcctttgtt  CT-rich tract
                          tatttgata  TA-rich tract