1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcaagctctaatacaccactgtgctgtgcatccatacatagtaccatgccacgcatagaaagagggatcatatatatacgcatagtctcgctgacaatgcaaacgtgattatattatatatatgggcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGCTGCGAGCTGAGAACATGCGGTACAAGGACGCGCTAGGCACAGCGTCCT
species | Zea mays |
transcript | GRMZM2G118063_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGEST: gi|78087580|gb|DV515973.1|DV515973
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACCAGEST: gi|148934302|gb|EC878328.2|EC878328
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG ACCCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACCAGEST: gi|149100689|gb|EE186778.2|EE186778
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGEST: gi|148953688|gb|EC899049.2|EC899049
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGEST: gi|149015319|gb|EE045135.2|EE045135
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAAGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGEST: gi|71299781|gb|DR785898.1|DR785898
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGEST: gi|149102070|gb|EE287534.2|EE287534
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
EST: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAG AACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
genomic: AGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctcta ... gcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAG
catagtctcgctgacaatgcaaacgtgattatattatatatatgggcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGCTGCGAGCTGAGAACATGCGGTACAAGGACGCGCTAGGCACAGCGTCCT
cgctgac putative branch site (score: 3)
aaacgtgattatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctctaatacaccactgtgctgtgcatccatacatagtaccatgccacgcatagaaagagggatcatatatatacgcatagtctcgctgacaatgcaaacgtgattatattatatatatgggcgtatgcagAACCAGCACGAGCGGCAGGAGAACGCGCAGCTGCGCGCAGAGAACGACAAGCTGCGAGCTGAGAACATGCGGTACAAGGACGCGCTAGGCACAGCGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA