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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttctactggagtgtttacacttgatctaggaacattccattctggccttccaactgataccataccattgctctaatcgtgaactccatatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG

Basic information

species Zea mays
transcript GRMZM2G117707_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117707_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g42960.2 (Oryza sativa), 3'ss of exon 3
atttctactggagtgtttacacttgatcta--ggaacattccattctggccttccaac-tgataccataccattgctc---taatcgtgaact---ccatatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG
         | |  || |||   || |  |  |||||  |    | ||     | | | | ||     || |||| ||   ||| | |||||    |  | | | |||||||||||| || || |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| |
---------gaaaagtgtaccactgctgaaacggaactgtaacctttgttaaactagcgtcattttggactattggtcaaataaacatgaacattgctgtgtttcacagGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCAGGAGGTATCCACCTGGAAATGACTGGGCAGAACGTGACTGAATGCATCG

upper sequence: GRMZM2G117707_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G22410.1 (Arabidopsis thaliana), 3'ss of exon 4
-atttctactggagtgtttacacttgatctaggaacattccattctggccttccaactgataccat-accattgctctaatcgtgaactccatatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG
 ||||  |    |   | |    ||  | ||  | ||   ||   | |  |     ||  ||  ||  | | |  |||||| || || |  | || ||  ||||||||||| | || |||||||||||||| || |||||||| || ||||| ||||| || ||||| ||||||||||| |||||||||||||||||||| |
gatttgaaaaaaataatcttggattagtatactagcaaagcaaaatcggttgttttcttgtattattgcaaatcatctaat-gttaattgaaaatata-tagGCTGAAGTGAGAGCTTTCTTCGACGTGCACGAGCAAGAAGGTAGCCACCCCGGAGGAATTCACCTAGAAATGACTGGTCAGAACGTGACCGAGTGCATCG

upper sequence: GRMZM2G117707_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ08096 (Selaginella moellendorffii), 3'ss of exon 4
atttctactggagtgtttacacttgatctaggaacattccattctggccttccaactgataccataccattgctctaatcgtgaactccatatctaac-agGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG
                      |   |||    ||||  |  ||    || ||| |   |        |   ||  || |||    | | | || | | |||| ||  ||   || ||||||||||| || || || |||||||| || || || ||| | ||||| || ||||| ||||||||||||||||||||||| |
---------------------gtaagtctcttgacat--cgatcgcagctcccagcatttgtttccagagaactaaaaacgttttgttcttgtccatccagGCCGAGCTGAAAGCTTTCTTCGACGTTCACGACCAGGAAGGAAGCCATCCCGGCGGCGTGCACCTGGAGATGACCGGGCAGAACGTGACCGAGTGCATCG

upper sequence: GRMZM2G117707_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ24698 (Selaginella moellendorffii), 3'ss of exon 4
atttctactggagtgtttacacttgatctaggaacattccattctggccttccaactgataccataccattgctctaatcgtgaactccatatctaac-agGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG
                      |   |||    ||||   ||    ||  |||||   ||        |   ||  || |||    | | | || | | |||| ||  ||   || ||||||||||| || || || |||||||| || || || ||| | ||||| || ||||| ||||||||||| ||||||||||| |
---------------------gtaagtctcttgacatgg-atcgcagc--tccaagcaatgtttccagaggactaaaaacgttttgttcttgtccatccagGCCGAGCTGAAAGCTTTCTTCGACGTTCACGACCAGGAAGGAAGCCATCCCGGCGGCGTGCACCTGGAGATGACCGGGCAGAACGTCACCGAGTGCATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342048|gb|DN209021.1|DN209021
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|13126232|gb|BG316802.1|BG316802
EST:     GCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: GCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|18383664|gb|BM416864.1|BM416864
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|76291136|gb|DV030704.1|DV030704
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|61118358|gb|DN559319.1|DN559319
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|60355295|gb|DN222268.1|DN222268
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|213171213|gb|FM184554.1|FM184554
EST:     GACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: GACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148939051|gb|EC883444.2|EC883444
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|29544928|gb|CB605536.1|CB605536
EST:     CATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|67030191|gb|CO458940.1|CO458940
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78117894|gb|DV536281.1|DV536281
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|149046654|gb|EE048043.2|EE048043
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32920109|gb|CF024921.1|CF024921
EST:     TGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: TGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32847591|gb|CD987272.1|CD987272
EST:     CCGTCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78117893|gb|DV536280.1|DV536280
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32836679|gb|CD976357.1|CD976357
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32838792|gb|CD978473.1|CD978473
EST:     ATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: ATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78180996|gb|DV551369.1|DV551369
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|61118357|gb|DN559318.1|DN559318
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|110943909|gb|EE164066.1|EE164066
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148969288|gb|EE020058.2|EE020058
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148953404|gb|EE152902.2|EE152902
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|13126714|gb|BG317284.1|BG317284
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32846672|gb|CD986353.1|CD986353
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|16920243|gb|BM074570.1|BM074570
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148958868|gb|EC905108.2|EC905108
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32848606|gb|CD988287.1|CD988287
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCA
EST: gi|148944293|gb|EC889389.2|EC889389
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|37416855|gb|CF646079.1|CF646079
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|67011816|gb|CO440565.1|CO440565
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|37391225|gb|CF632854.1|CF632854
EST:     AGGCCCC-TGTGGCCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: AGGCCCCTTGTGG-CCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32940523|gb|CF045342.1|CF045342
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|211231466|gb|FL476108.1|FL476108
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148930427|gb|EE284921.2|EE284921
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78108038|gb|DV526456.1|DV526456
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148968300|gb|EE019488.2|EE019488
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|24934562|gb|CA452780.1|CA452780
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32865363|gb|CF005045.1|CF005045
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148966970|gb|EE018112.2|EE018112
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32849069|gb|CD988750.1|CD988750
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGA
EST: gi|12045793|gb|BF727932.1|BF727932
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148986216|gb|EE029964.2|EE029964
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78082881|gb|DV511274.1|DV511274
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|29544323|gb|CB604703.1|CB604703
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|211411439|gb|FL197904.1|FL197904
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|67028009|gb|CO456758.1|CO456758
EST:     CCATCAATTCCACTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGTATTCCTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32865203|gb|CF004885.1|CF004885
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|32846086|gb|CD985767.1|CD985767
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|78092819|gb|DV521193.1|DV521193
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|24934601|gb|CA452819.1|CA452819
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|149081795|gb|EE170953.2|EE170953
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|37381245|gb|CF627497.1|CF627497
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|60396440|gb|DN229309.1|DN229309
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148968586|gb|EE019576.2|EE019576
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTTTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|6859998|gb|AW355992.1|AW355992
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|116816287|gb|EC859012.1|EC859012
EST:     CATCAAGGCCCCTTGTGGCCTGAAGACTCGNTCCATTTGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGATGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CATCAAGGCCCCTTGTGGCCTGAAGACTCG-TCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
EST: gi|148994594|gb|EE034158.2|EE034158
EST:     CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTG                         GCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 354

CAATGCTGGATTAATTGTCACATGGATTACTGATCCTATGCATGGAAACACCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 351

CAATGCTGGATTAATTGTCACATGGATTACTGATCCTATGCATGGAAACACCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 383

CAATGCTGGATTAATTGTCACATGGATTACTGATCCTATGCATGGAAACACCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 948

CAATGCTGGATTAATTGTCACATGGATTACTGATCCTATGCATGGAAACACCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTCGACTCAATTCTGgtgagtgacc ... tatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccttccaactgataccataccattgctctaatcgtgaactccatatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG
                           ctctaat  putative branch site (score: 948)
                                            atatctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttctactggagtgtttacacttgatctaggaacattccattctggccttccaactgataccataccattgctctaatcgtgaactccatatctaacagGCTGAAGTGCGCGCATTCTTCGACGTGCATGATCAAGAAGGAAGTCACCCAGGAGGCATCCACCTTGAAATGACTGGGCAGAACGTGACCGAGTGCATTG

- - ctactgg
- - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatacc