1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcggaaaccttaaatgttgtaatacatgagaaatgtttgcgttttaatggcatgttgcttcttattatagtgtgaagattgaaaactggaactagaggatttctattagatgcagatgaaaatgctaattctttgtttctgtttctaacatatttaattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCAATGAGTGACT
species | Zea mays |
transcript | GRMZM2G116919_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|76917612|gb|DV166918.1|DV166918
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GAAACTCAAATTTCCACCGGATTATCCTTTTTAAGCCTCCAAGTTATCAG CAAGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTEST: gi|50332246|gb|CO527372.1|CO527372
genomic: GAAACTCAAATTTCCACCGGATTATCC-TTTTAAGCCTCCAAG-TATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGT
EST: CCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|78544504|gb|DV622002.1|DV622002
genomic: CCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGAAACTCAAA-TTCCANCCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|78123531|gb|DV541915.1|DV541915
genomic: GGAAACTCAAATTTCCA-CCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: TTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|71420480|gb|DR805114.1|DR805114
genomic: TTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: TTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|31364477|gb|CD448832.1|CD448832
genomic: TTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|5343079|gb|AI795489.1|AI795489
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|71756603|gb|DR954540.1|DR954540
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: TTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|8103224|gb|AW927877.1|AW927877
genomic: TTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|60346203|gb|DN213176.1|DN213176
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|71320224|gb|DR796871.1|DR796871
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: AAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|9742575|gb|BE518723.1|BE518723
genomic: AAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|60341447|gb|DN208420.1|DN208420
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCEST: gi|16920917|gb|BM074893.1|BM074893
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: CTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: CTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
tgcagatgaaaatgctaattctttgtttctgtttctaacatatttaattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCAATGAGTGACT
tttctaacatatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggaaaccttaaatgttgtaatacatgagaaatgtttgcgttttaatggcatgttgcttcttattatagtgtgaagattgaaaactggaactagaggatttctattagatgcagatgaaaatgctaattctttgtttctgtttctaacatatttaattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTCAATGAGTGACT
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