1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccaataatattgccatctgggtttttcataatgaacatcataaacttgttggaacactgctgttataatgagttttgttatactgtttctttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACCATGATTCCATGAGATGGCAACTATCACTGGCCCCTTAAG
species | Zea mays |
transcript | GRMZM2G116840_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG ATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACCEST: gi|211372658|gb|FL212545.1|FL212545
genomic: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactg ... ttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACC
EST: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG ATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACCEST: gi|89248057|gb|DY619843.1|DY619843
genomic: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactg ... ttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACC
EST: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG ATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACC
genomic: TCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactg ... ttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACC
ttgttggaacactgctgttataatgagttttgttatactgtttctttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACCATGATTCCATGAGATGGCAACTATCACTGGCCCCTTAAG
ttatactgtttctttt CT-rich tract
ttataatgagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaataatattgccatctgggtttttcataatgaacatcataaacttgttggaacactgctgttataatgagttttgttatactgtttctttttttccagATTGGTCCACTGGCTATGCCAAGAAATTCCTAGAAATATTACTAACTAACCATGATTCCATGAGATGGCAACTATCACTGGCCCCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG