1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttttttaagaccaatgccctctagagtctagatgtcttctgcatttggaaacaagatatctttaatctattcactgtgtcctttttttcaattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATCATTCGAACTGGTCGCACTGGCCATTGGTTG
species | Zea mays |
transcript | GRMZM2G116563_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATG TCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGACEST: gi|56691643|gb|CX129546.1|CX129546
genomic: GTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATGgtaagttttc ... caattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGAC
EST: TTGANNNNNNNATGGGTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATG TCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGACEST: gi|60399694|gb|DN232504.1|DN232504
genomic: TTGATTTTTTTATGGGTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATGgtaagttttc ... caattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGAC
EST: TTGANNNNNNNATGGGTAACTGGTCGTGCCATGGAGCTTGGGCGAGAATG TCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGAC
genomic: TTGATTTTTTTATGGGTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATGgtaagttttc ... caattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGAC
tttggaaacaagatatctttaatctattcactgtgtcctttttttcaattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATCATTCGAACTGGTCGCACTGGCCATTGGTTG
ctttaat putative branch site (score: 97)
tcctttttttcaattc putative PPT
atatctttaatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttttaagaccaatgccctctagagtctagatgtcttctgcatttggaaacaagatatctttaatctattcactgtgtcctttttttcaattctcagTCTGGAGCTCTGGGGTTACAAGCGTGTTGAAGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATCATTCGAACTGGTCGCACTGGCCATTGGTTG
- - - - - - - - tgccctc
- - - - - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga