1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacttttagtctaatttttctcttattataagcagaattctgtcaaacattagaactaaaaactacagctgttcttgacaaattgttatttgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
species | Zea mays |
transcript | GRMZM2G114758_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|26456351|gb|CA827934.1|CA827934
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: ATGTTAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|71304851|gb|DR788540.1|DR788540
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|78118561|gb|DV536945.1|DV536945
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|91048770|gb|EB159188.1|EB159188
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|213167931|gb|FM194811.1|FM194811
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGEST: gi|211480276|gb|FL093313.1|FL093313
genomic: ATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
EST: CAAGATTTGGGCTTTTGAAG GAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
genomic: CAAGATTTGGGCTTTTGAAGgtaaggcacc ... tgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
aacattagaactaaaaactacagctgttcttgacaaattgttatttgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
tttgtct CT-rich tract
acaaattgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttttagtctaatttttctcttattataagcagaattctgtcaaacattagaactaaaaactacagctgttcttgacaaattgttatttgtctaacagGAGTTGAGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG