1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaactgacacgcgtcttactatgtcttcagattatacaaggttcatattatacctacacatacgctaatcctggtgcatttctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCCTCAAGACCTTAATCTTGAAGACTCTAAAGGAACGAAACAAAAAGGATG
species | Zea mays |
transcript | GRMZM2G114192_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAG ATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCEST: gi|71299638|gb|DR785827.1|DR785827
genomic: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaactgac ... tctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
EST: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAG ATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCEST: gi|78089387|gb|DV517761.1|DV517761
genomic: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaactgac ... tctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
EST: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAG ATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCEST: gi|16379323|gb|BI992874.1|BI992874
genomic: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaactgac ... tctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
EST: TTTTTGCGCCCAATATGACTCAG ATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCEST: gi|76017793|gb|DT944963.1|DT944963
genomic: TTTTTGCGCCCAATATGACTCAGgttaactgac ... tctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
EST: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAG ATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
genomic: AGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaactgac ... tctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTC
acaaggttcatattatacctacacatacgctaatcctggtgcatttctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCCTCAAGACCTTAATCTTGAAGACTCTAAAGGAACGAAACAAAAAGGATG
cgctaat putative branch site (score: 52)
tgcatttctcttcc putative PPT
ttcatattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaactgacacgcgtcttactatgtcttcagattatacaaggttcatattatacctacacatacgctaatcctggtgcatttctcttccagATGGCCGATCCGTTAACTGCCCTGATACATGCGGTTCAGGTGATGAATTTCCTCAAGACCTTAATCTTGAAGACTCTAAAGGAACGAAACAAAAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG