1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttacacaaatgacttactgattgagctgcccatgtaaagccttgtacccttgttgctatatctattaacattctttcttgtgttaaccttcgttcaccagGCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATCTGCAGAAATGGTGTCTGCCCTTGCAAATTTAGGCTGTTACTTTTCACTA
species | Zea mays |
transcript | GRMZM2G114131_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTAGAAGTATTGAA GCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATCEST: gi|74238219|gb|DT646133.1|DT646133
genomic: GTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTGGAAGTATTGAAgtaagacatg ... cgttcaccagGCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATC
EST: GTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTGGAAGTATTGAA GCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATC
genomic: GTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTGGAAGTATTGAAgtaagacatg ... cgttcaccagGCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATC
acccttgttgctatatctattaacattctttcttgtgttaaccttcgttcaccagGCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATCTGCAGAAATGGTGTCTGCCCTTGCAAATTTAGGCTGTTACTTTTCACTA
ccttcgttc CT-rich tract
tatatctattaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacacaaatgacttactgattgagctgcccatgtaaagccttgtacccttgttgctatatctattaacattctttcttgtgttaaccttcgttcaccagGCAAACTGGACCTTTCCCAGCAGGCGTGTTGTTACATTCTTATATGGGATCTGCAGAAATGGTGTCTGCCCTTGCAAATTTAGGCTGTTACTTTTCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- acacaaa
- - - - - - - - ctgattg
- - - - - - - - - - - -agctgcc
- - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgct