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...atgcaggaccttgtagctctgtacatatgttataccgaaaagtcagatgccctgtcaagtcctgcgaatttgttaagcttgttccgtccctgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAAACTTTTCTGTGCTTCATTGGTCAGCAATGACTTATAAGAAGCAAGAAG
species | Zea mays |
transcript | GRMZM2G113726_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|211202621|gb|FL195841.1|FL195841
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCCACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|51593066|gb|CV072212.1|CV072212
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: AGTTTCAGCACAGCACGAGGTCGGTGAGACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|60349121|gb|DN216094.1|DN216094
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|32795211|gb|CD947447.1|CD947447
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|71771227|gb|DR969164.1|DR969164
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAEST: gi|109179023|gb|EC379766.1|EC379766
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: GGTCGGTGAAACCGACCATCCGTCATTTCCAG TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: GGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
gatgccctgtcaagtcctgcgaatttgttaagcttgttccgtccctgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAAACTTTTCTGTGCTTCATTGGTCAGCAATGACTTATAAGAAGCAAGAAG
ttccgtccctgtctt CT-rich tract
aatttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaggaccttgtagctctgtacatatgttataccgaaaagtcagatgccctgtcaagtcctgcgaatttgttaagcttgttccgtccctgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCAAACTTTTCTGTGCTTCATTGGTCAGCAATGACTTATAAGAAGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
atgcagg
- - - - - -tgtagct
- - - - - - - - - ctgtaca
- - - - - - - - - - - - - - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcctgc