1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggtgactcttgctaaaatttaaatgaccatttgtacctaactttattttctcaaacttgtgaatgacatgtattttttattattttttgattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
species | Zea mays |
transcript | GRMZM2G113640_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAWAGEST: gi|211270657|gb|FL248447.1|FL248447
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAEST: gi|211270648|gb|FL248438.1|FL248438
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTA
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTEST: gi|211270651|gb|FL248441.1|FL248441
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGT
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGEST: gi|211270649|gb|FL248439.1|FL248439
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAACAGAACTTAAATCTGEST: gi|211270655|gb|FL248445.1|FL248445
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAA-AGAACTTAAATCTG
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGGCEST: gi|211270656|gb|FL248446.1|FL248446
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGGC
EST: GACCC-AC-AGTCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
genomic: GACCCGACTA-TCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAGgtatgacaat ... gattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
tattttctcaaacttgtgaatgacatgtattttttattattttttgattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
ttttgat putative branch site (score: 4)
ttttttg CT-rich tract
tgaatgacatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtgactcttgctaaaatttaaatgaccatttgtacctaactttattttctcaaacttgtgaatgacatgtattttttattattttttgattttgcagCTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC