1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaaacagcgtcacacagagcaaatggaacacttctaaaagcattcttcttcccctaattgaactttaccttgtggctgaatagaaagcaatttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG
species | Zea mays |
transcript | GRMZM2G113640_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG GCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAEST: gi|213171204|gb|FM188301.1|FM188301
genomic: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGgtattgttct ... tttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGA
EST: TAAATCTGAAAG GCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAEST: gi|78110824|gb|DV529222.1|DV529222
genomic: TAAATCTGAAAGgtattgttct ... tttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGA
EST: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG GCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAEST: gi|6227108|gb|AW155812.1|AW155812
genomic: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGgtattgttct ... tttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGA
EST: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAG GCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGA
genomic: CTGGACATCGATTTAGTTTGGTCTGACATAAAGAACTTAAATCTGAAAGgtattgttct ... tttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGA
ttcttcccctaattgaactttaccttgtggctgaatagaaagcaatttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG
ccctaat putative branch site (score: 3)
taattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacagcgtcacacagagcaaatggaacacttctaaaagcattcttcttcccctaattgaactttaccttgtggctgaatagaaagcaatttagtgcagGCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA