Sequence
atgc intronic sequence ATGC exonic sequence...tcagacaaaaatctgttaaaatagatgtaccatgattttttatgcgattacttttaagatttctatatcctccaactcagttttagttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 3'ss of exon 3
----tcagacaaaaatctgttaaaatagatgtaccatgattttttatgcgattacttttaagatttctatatcctccaactcagttttagttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
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gcgctcctgattttttttatgtaactataagtttccgaatttatgatcc--ctagataccgcatgtggatattgctca-tacatttttagttttgtg-atacagTATGCTCATCGGGCTTGTGTGCAACGATGGTGCAATGAGAAAGGAGATGTAACGTGTGAAATTTGTCATGAG
upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G04870.1 (Glycine max), 3'ss of exon 1
tcagacaaaaatctgttaaaatagatgtaccatgattttttatgcgattacttttaagatttctatatcctccaactcagtttt---agttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
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---gagacatctttgttttttttttttttcctttaatatgcttgcttgcatttctattttgtgttaataatgatttgtggttttttggaaattttacgtacagTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAG
upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 4
lower sequence: Vv17s0000g06230.t01 (Vitis vinifera), 3'ss of exon 2
tcagacaaaaatctgttaaaatagatgtaccatgattttttatgcgattacttttaaga----tttctatatcctccaactcagttttagttttttct-atgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
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----acacccacccactcacagacatgggaaa-aatgtttaatgtgttggttctttggaattatttcctagactagtaccaaactgacacctctgtctcatccagTTTGCTCATAGGAAATGTGTTCAACGATGGTGCAATGAGAAAGGAGATGTAACTTGCGAGATCTGTCATCAG
upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 4
lower sequence: Vv01s0026g02470.t01 (Vitis vinifera), 3'ss of exon 4
--tcagacaaaaatctgttaaaataga-tgtaccatgattttttatgcgattacttttaagatttctatatcctccaactcagttttagttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
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tgtattgtcattatgagataaaatttagtactccttgatatttttctctctaactccattgtcagtcaaatttgtta--ttgactgta-tattttttttccagTATGCTCATAGGAAGTGTGTTCAACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8551597|gb|BE128942.1|BE128942EST: ATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAG TATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTA
genomic: ATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAGgttcgtgtta ... ttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattacttttaagatttctatatcctccaactcagttttagttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
ttttagttttttct CT-rich tract
ttttaagatttctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcagacaaaaatctgttaaaatagatgtaccatgattttttatgcgattacttttaagatttctatatcctccaactcagttttagttttttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTAACATGTGAAATATGTCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - acaaaaa
- - - - - - - - - - - -gatgtac
- - - - - - - - - - - - - - - catgatt