1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgtccttagggcatggtgtcaccccaattattttaaagttatggttgtaataacatcattgttctgatttggttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTT
species | Zea mays |
transcript | GRMZM2G113592_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATAAGCTCGAGCAAGGCGCAGCCTAAGGTTGCTGAAGAGCTTCAGAAGT ATGACCCACAAAGTGACCCCAATGCTACCTGGAGATCCCTACAAAACACTCEST: gi|148967855|gb|EE019150.2|EE019150
genomic: AATAAGCTCGAGCAAGGCGCAGC-TAAGGTTGCTGAAGAGCTTCAGAAGTgtacgtcctt ... ttttatgcagATGACCCACAAAGTGACCCCAATGCTAC-TGGAGATCCATACAAAACACTC
EST: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT ATGACCCACAAAGTGACCCCAATGCEST: gi|211227314|gb|FL251475.1|FL251475
genomic: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGTgtacgtcctt ... ttttatgcagATGACCCACAAAGTGACCCCAATGC
EST: AATAAGCTCGAGCAAGGCGCAGCTTAAG-TTGCTGAAGAGCTTCAGAAGT ATGACCCACAAAGTGACCCCCATGGTACTGGAGATCCATACAAAACACEST: gi|211227311|gb|FL251472.1|FL251472
genomic: AATAAGCTCGAGCAAGGCGCAGCT-AAGGTTGCTGAAGAGCTTCAGAAGTgtacgtcctt ... ttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACAC
EST: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT ATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCTEST: gi|91051679|gb|EB162097.1|EB162097
genomic: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGTgtacgtcctt ... ttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCT
EST: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT ATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCT
genomic: TAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGTgtacgtcctt ... ttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCT
ttattttaaagttatggttgtaataacatcattgttctgatttggttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTT
ttaaagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtccttagggcatggtgtcaccccaattattttaaagttatggttgtaataacatcattgttctgatttggttttatgcagATGACCCACAAAGTGACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC