Sequence
atgc intronic sequence ATGC exonic sequence...ttatacttgtactctgtagcaaagattgtgaaatttatcatgtacaattgtagattttgtacatctttttaacctaattcgttcacttctcttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTTCAGCGTGACTTGTCTCCCCTTTGGGCGATCAATCTTGAAGGGAAGGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113506_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g11330.1 (Oryza sativa), 3'ss of exon 4
ttatacttgtactctgtagcaaagattgtgaaatttatcatgtacaattg-tagattttgtacatcttt-ttaacctaattcgttcacttctcttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTTCAGCGTGACTTGTCTCCCCTTTGGGCGATCAATCTTGAAGGGAAGGTGA
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tgaaactggataatagctgtgttacttttacagctactgacaaatgaaagatatggcctacccatctttctttagctgatgatattatttatttata--cagCTTTTTCCGAACCTCAACAAGGTGGTCTTTCTTGATGACGACATTGTTATTCAGCGTGATTTGTCTCCCCTTTGGAAGATCAATCTCGAAGGGAAGGTGA
upper sequence: GRMZM2G113506_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 3'ss of exon 4
--ttat-acttgtactctgtagcaaagattgtgaaatttatcatgta-caattgtagattttgtacatctttttaacctaattcgttcacttctcttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTTCAGCGTGACTTGTCTCCCCTTTGGGCGATCAATCTTGAAGGGAAGGTGA
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ttttattatttatatacc-tcttaagattgatgataatcattacatttctgtttttgtttttgtttgcgctatt--tttatgttgattgtgtgcatgtaa-cagCTCTTTCCAAACCTCAACAAGGTGGTCTTCTTAGATGATGATGTTGTAATTCAGCGTGATCTCTCTCCACTCTGGGAAATTGACCTTGAGGGAAAGGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18170741|gb|BM340581.1|BM340581EST: GCCCTAAATACATATCCCTGCTGAACCATCTCCGTATTTATTTGCCTGAG CTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTT
genomic: GCCCTAAATACATATCCCTGCTGAACCATCTCCGTATTTATTTGCCTGAGgtgcctggcc ... cttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgtagattttgtacatctttttaacctaattcgttcacttctcttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTTCAGCGTGACTTGTCTCCCCTTTGGGCGATCAATCTTGAAGGGAAGGTGA
ttcgttcacttctctt CT-rich tract
tttttaacctaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatacttgtactctgtagcaaagattgtgaaatttatcatgtacaattgtagattttgtacatctttttaacctaattcgttcacttctcttcaatcagCTCTTTCCCAACCTCAACAAGGTGGTCTTCCTCGATGATGACATTGTTGTTCAGCGTGACTTGTCTCCCCTTTGGGCGATCAATCTTGAAGGGAAGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG