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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgttattttattttaccgtatttgttcaaataagatcatagtaagatagtagtactaacgtttttcaacaaaaaaaaggagaatttaaaattcaagtgctggcctgtgcagGCATCTTCAGATTTGAGCATTCTAGACTTCGACATACCTTACTCCATGGCTTTTGTGGCGACGGGCGGCATTGAGGTTGTTACCACAGTACTGGTCATGG

Basic information

species Zea mays
transcript GRMZM2G113203_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113203_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g36650.1 (Oryza sativa), 3'ss of exon 5
gtatggttgttattttattttaccgtatttgttcaaataagatcatagtaagatagt--agtactaacgtttttcaacaaaaaaaaggagaatttaaaattcaagtgct---ggcctgtgcagGCATCTTCAGATTTGAGCATTCTAGACTTCGACATACCTTACTCCATGGCTTTTGTGGCGACGGGCGGCATTGAGGTTGTTACCACAGTACTGGTCATGG
             | |    | |   ||  | ||| |  || | |   | ||||  |  |  |  ||   || |     ||      |  | |     | |  ||  ||      || ||||||||||||||||||| ||||| || ||||| ||||||||||||||| |||||| ||| |     ||||  |                              
------------gtatggacttcaaaataagatcataagagctaacctttagattctccatgaacaattattataggtcaagtggttgctagtacctgactgtagcccttttattctctgcagGCATCTTCAGATTTAAGCATCCTGGACTTTGACATACCTTACTCCGTGGCTTATGTCGTCGTTGGCGCTA------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtttttcaacaaaaaaaaggagaatttaaaattcaagtgctggcctgtgcagGCATCTTCAGATTTGAGCATTCTAGACTTCGACATACCTTACTCCATGGCTTTTGTGGCGACGGGCGGCATTGAGGTTGTTACCACAGTACTGGTCATGG
 tactaac  putative branch site (score: 0)
             aaaaaaaaggagaatt  TA-rich tract