1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttcattatgaatcagactgcagtaaacccttgaaatgacatatactaggatatagcagattctgggtagacaagtacttatccgtcatgtcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCGCCTCCTCAACGAGTCCCTCTTGATCCATGGGCCAAGTCACGTGCTAGC
species | Zea mays |
transcript | GRMZM2G112865_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|37393499|gb|CF634015.1|CF634015
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGACAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|211239658|gb|FL451920.1|FL451920
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|60353121|gb|DN220094.1|DN220094
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|110963515|gb|EE183415.1|EE183415
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|22490485|gb|BU050408.1|BU050408
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACEST: gi|21987795|gb|BQ779323.1|BQ779323
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAAC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|32929716|gb|CF034528.1|CF034528
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|60356193|gb|DN223166.1|DN223166
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|60397912|gb|DN230728.1|DN230728
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|87151864|gb|DY396653.1|DY396653
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCEST: gi|18965108|gb|BM661397.1|BM661397
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCEST: gi|32909297|gb|CF014109.1|CF014109
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|50337603|gb|CO532729.1|CO532729
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|22545985|gb|BU098344.1|BU098344
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCEST: gi|148963908|gb|EE015020.2|EE015020
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
EST: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA GTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
genomic: TTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGAgtaacattct ... tcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCC
ctaggatatagcagattctgggtagacaagtacttatccgtcatgtcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCGCCTCCTCAACGAGTCCCTCTTGATCCATGGGCCAAGTCACGTGCTAGC
tacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattatgaatcagactgcagtaaacccttgaaatgacatatactaggatatagcagattctgggtagacaagtacttatccgtcatgtcatatgcagGTTCGTGGATAGGGAGAATGAGCTTCGAGAGGCCAAACCTGCAACGCCGCCGCCTCCTCAACGAGTCCCTCTTGATCCATGGGCCAAGTCACGTGCTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC