1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctacctcagacccactcatgtgggagcctccggcactgggtctgccctttaaaaagaatcaatgtgaatggtactttctaatacttttctgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCTGTTCTGTACTTGGCATGGATTTTGTGGGCACTGTTACTAAAGTTCATC
species | Zea mays |
transcript | GRMZM2G112337_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|67014008|gb|CO442757.1|CO442757
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|76289491|gb|DV029059.1|DV029059
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148930867|gb|EC873288.2|EC873288
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTTGAGT-CAGTGCACGATCTEST: gi|78112667|gb|DV531061.1|DV531061
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGT-GAGTTCAGTGCACGATCT
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|76013336|gb|DT940506.1|DT940506
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148999825|gb|EE036849.2|EE036849
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAAGT-CAGTGCACGATCTEST: gi|149096273|gb|EE181983.2|EE181983
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGA-GTTCAGTGCACGATCT
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148964767|gb|EC906024.2|EC906024
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148995698|gb|EE034921.2|EE034921
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAEST: gi|149015047|gb|EE044793.2|EE044793
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGA
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|71324224|gb|DR798815.1|DR798815
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCCGAACTACTAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|211422902|gb|FL467602.1|FL467602
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
ccctttaaaaagaatcaatgtgaatggtactttctaatacttttctgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCTGTTCTGTACTTGGCATGGATTTTGTGGGCACTGTTACTAAAGTTCATC
ttctaat putative branch site (score: 63)
tacttttct CT-rich tract
taaaaagaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctacctcagacccactcatgtgggagcctccggcactgggtctgccctttaaaaagaatcaatgtgaatggtactttctaatacttttctgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCTGTTCTGTACTTGGCATGGATTTTGTGGGCACTGTTACTAAAGTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - -gcactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg