Sequence
atgc intronic sequence ATGC exonic sequence...aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g40840.1 (Oryza sativa), 3'ss of exon 2
---------------------------------------------------------------------aaccattctaacccattatctagatta-agagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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gtgcctttgtctcttccaatgttcttttgtatgtgtgctttataatgactggaactaaggatagcagcaagccattttagttccctatctacaccatagcatctgtgcaacgaaaagttatatgagtagtgcataggattgg-acaagtgactgactagtgtcatttcagTTGATATGGGATGAGGTTGGTGAAAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTACAGGAGAAAGGTTGATC
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G02180.4 (Glycine max), 3'ss of exon 2
--aaccattctaacccattatctagattaag--agttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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gtaactaacttcattcagcttttcatctgtgtcacttaagatgcgaatgctctacagaataatgggata--aattaattacattttctttattcgctgt---agGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G10090.1 (Glycine max), 3'ss of exon 1
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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---------------gtaactctacaatgcttttcatctgtgttactgcagatgtgcatggtctacaaaacagtgagggtgtctttat---ttgttgcagGGAATATGGGATGAGGTTGGTGAGAGCGATGAGGAGCAAGACAAGATGCTCCTTCAGATAGAGCAAGAGTGTTTGAATGTGTACAAAAGAAAG-------
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G02200.1 (Glycine max), 3'ss of exon 1
--aaccattctaacccattatctagattaag--agttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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gtaactaacttcattcagcttttcatctgtgtcactcaagatgcgaatgctctacagaataatgggataa-attaatttcat---tttctttat-tcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G46450.3 (Glycine max), 3'ss of exon 2
------aaccattctaacccatt-atctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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gtaactaactacattcagctattcatct---ttgtcacttaagatgcgaatgctctacagaataatgggattagataattaca--ttatctttatacactgt---agGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAACAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 1
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattg-ctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
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-gtcattgtttactttgtgatatattagtgttataagtagaccttgcatactgaggaacagggcaaatacgctaaatgctgtaaaccatggtttaatgcagCAAATCTGGGATGAGGTTGGTGAAAGCGATGAGGAACGTGATAAAATGCTCCTTCAGTTAGAGCAAGAGTGCTTGGACGTTTATAAGAGGAAGGTTGATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32924971|gb|CF029783.1|CF029783EST: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
ttatttc CT-rich tract
tgttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- ccattct
- - - - - - - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc