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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatccacacaaagcagcgaacaactttttttcagcataatctttgttaattgataatgtgatgtgttatgaaatacagGGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGATGAGCCTACCCTTGTTAAAGACCTTGATGCTCACGAATTGGCCGCATTC

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112149_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S27_81V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------gtaagcatccacacaaagcagcgaacaactttttttcagcataatctttgttaattgataatgtgatg----tgttatgaaatacagGGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGATGAGCCTACCCTTGTTAAAGACCTTGATGCTCACGAATTGGCCGCATTC
                  ||   || | ||   |    ||  |    |    | |      | | ||||| | |  | || ||||      ||| |    |||||||| ||  |  | || ||||||| ||||||||| |||||||||||||| || ||||| |  ||||| |  ||||| || |||    | |  |  || || 
gtaagtgtgctttgagaagtcgacacctacgtgacattgcagaactttcggatacgtgtggagcgttgttgagttttcatctgattgatccgttgttcgttacagGGAAGTAATCACGGAACTGAAGGAAGCTGGTGCCTCATGGATTCAGCTGGACGAGCCCAAGCTTGTCATGGACCTAGAAGCTGCTCAGTACGAGGCTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211335859|gb|FL127562.1|FL127562
EST:     AAATCTTTCTCTCTTCTTTCACTTCTTGGTAGCATTCTTCCCATCTACAA                         GGAGGTTGTTGCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGA
genomic: AAATCTTTCTCTCTTCTTTCACTTCTTGGTAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatacagGGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGA
EST: gi|211325027|gb|FL127486.1|FL127486
EST:     AAATCTTTCTCTCTTCTTTCACTTCTTGGTAGCATTCTTCCCATCTACAA                         GGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGA
genomic: AAATCTTTCTCTCTTCTTTCACTTCTTGGTAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatacagGGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttcagcataatctttgttaattgataatgtgatgtgttatgaaatacagGGAGGTTGTTGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGCTTGATGAGCCTACCCTTGTTAAAGACCTTGATGCTCACGAATTGGCCGCATTC
            ataatctttgttaatt  TA-rich tract