1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttggtgatgtccctccttgtttctaccttccttgctgcacagaataaagctaagagatgcaacattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGTCAACGCAGCTTTCCTTGCTTCTCTATACAGCGACTATCTTGAAGCTGC
species | Zea mays |
transcript | GRMZM2G110735_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTATGTGCTCATATCTGCCTCTATTCAACTT-ATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|23199797|gb|BU582362.1|BU582362
genomic: GTTATGTGCTCATATCTGCCTCTATTCAA-TTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|4152114|gb|AI372248.1|AI372248
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|211316249|gb|FL106351.1|FL106351
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|67022056|gb|CO450805.1|CO450805
genomic: TATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTACGCTGEST: gi|32938675|gb|CF043494.1|CF043494
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTACGCTGEST: gi|40336598|gb|CK370668.1|CK370668
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|6020730|gb|AW065538.1|AW065538
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTTTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|211210848|gb|FL335709.1|FL335709
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|21891489|gb|BQ744702.1|BQ744702
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGEST: gi|32939292|gb|CF044111.1|CF044111
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTACGCTGEST: gi|23357502|gb|BU645151.1|BU645151
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
EST: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAG GAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
genomic: TGTTATGTGCTCATATCTGCCTCTATTCAATTCATTCAACTTCACTAAAGgttggtgatg ... cattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTG
tgtttctaccttccttgctgcacagaataaagctaagagatgcaacattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGTCAACGCAGCTTTCCTTGCTTCTCTATACAGCGACTATCTTGAAGCTGC
agaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgatgtccctccttgtttctaccttccttgctgcacagaataaagctaagagatgcaacattttgcagGAGGACTAATACAACTCAACCATGGAAGGCCTCAGCCACTTCAGTATGCTGTCAACGCAGCTTTCCTTGCTTCTCTATACAGCGACTATCTTGAAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC