Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

Basic information

species Zea mays
transcript GRMZM2G110378_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatg-gtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
||  ||      |  |     |    |    || |     | | ||| |||  ||| |    ||  | || |    |   || | |||      ||| ||||||||||||| || |||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||||||
aagctacctgcgaccccattgtgtccaggcctgaacaaacagc-taactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacat-aattgt---ttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
  | |   ||   ||||  | |   | | |   | | ||  |||| |||| |      |||  | |   |  || ||  |  || |||| ||   | |  ||||||||||| || || ||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||  |||| |||||||| ||
--attccacacg-tacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggttt-gtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacat-aattgtttaca--tggtgtgg----ctgatgtttccgctttt-ttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
        |||| ||||| | |   | | |   | | ||  |||| ||||  | ||     || |      || || ||   |  ||| |||| ||  || |  ||||||||||| || || ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| ||||| ||||||||  |||| |||||||| ||
-------acata-tacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
                 |   ||    || ||     || |   | ||| |||  ||  |     || | ||||| ||   | | || ||      |||||||||||  | ||||||||||||||||||||||||||||| || || ||||| || ||||| || ||||||||||| |||||| ||||||| ||||||||
----------------gtttgtatatcaccatctgtcttga--ttcattcttt-tataatcacattgttctttcc-ctgaatcaattccttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 2
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
                 |   ||    || ||     || |   | ||| |||  ||  |        | ||||| ||   | | || ||      |||||||||||  | ||||||||||||||||||||||||||||| || || ||||| || ||||| || ||||||||||| |||||| ||||||| || |||||
----------------gtttgtatattaccatctgtcttga--ttcattcttt-tataatcacatcattctttcc-ctgaatcaattcctttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
             |  ||   ||   | |  |   | ||   |||| || ||  |||    | | |  |        |    || ||||| ||   |||||||||||| | |||||||| |||||||| |||||||||||||| || ||||| || ||||| || || ||||||||||||||| ||||||||||||| ||
----------gtttgtatttgtatccatctgtttcaatt---catagtt-ttgtcatcacattgttctttccctgaatcaaatactttctgaa---acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
             |  |   ||    | |  |   | || | |    |||| | ||   |||      | |    |  |      ||| | ||||   |||||||||| | |||||||||||||||||||||||||||||||| || ||||| || ||||| || || ||||||||||| ||| ||||||||||||| ||
----------gtttgtacttatttccatctgtcttaattca-ctcctttgtcttcacattgttc----tatccttgaatcaaatctttttgaatc---agGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgct---tttttattttct--caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
                             | |  |  |||  | |  ||||||| |     ||     | |||   ||    | | ||| |||  || |  ||||||||||| || || |||||||||||||||  |||||||||||| || || || || |   | ||||| |||||||| || ||||| || |||||||| ||
--------------------------gttagtacattttaggcttt-ttgtttatactcattgatcattatttgaactgagctctgattatcttccattgaacagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
          | |    | ||   ||||||    |   | |     ||| | | | |  |     | |  ||   |   || | ||||   ||    |||||||||| ||||| |||||||||||||||  |||||||||||| || || || || ||||| ||||| ||||| || |||||||| |||||||| |||||
---------gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttac-ttaaagtcgttctctttttgtaa----cagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 3
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttc--tcaa-------tctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
             ||  ||| || |||      |||  | |||| | |  |||   |  |||   | ||| ||  |   | ||  |  |  | ||       |||  |||||||||  | ||||||||||||||||||  |||||||||||| || || || || |   | ||||| ||||| || || ||||| || |||||||||||
-----------gttagttcattattaatgtcgagaaaatgaacaaagt--tttgttttctgtttttaatgattatgtcatattgatcacagtgaaatgattttctttagGTATTGTGTTGGACTCTGGTGATGGTGTGTCTCACACTGTGCCTATCTACGAGGGTTTCTCACTTCCACATGCTATCCTCCGTCTCGACCTTGCTGGTCG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttcc-gcttttttattttctcaatctac-agGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
             | | | | ||| |     | | | |  ||  |   | |||   |  ||| | |  |||  || |  || | | || |||  |  || ||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| || |||||||| ||
------------gttcgt-attaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctac----agGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
     ||    || |  |   |  | |  | ||| |  |    |  ||  ||| | |    ||     ||||     |  |  | ||| |   | |      |||||||||  | || |||||||||||||| || || || ||||| || |||||||||||||| ||||| ||||| || |||||  | || |||||||||||
----aaatttcaagaattttttcctcagtattggtaactgccgactatgattttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84980900|gb|DW531249.1|DW531249
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|23357755|gb|BU645404.1|BU645404
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|67015167|gb|CO443916.1|CO443916
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|22520597|gb|BU079408.1|BU079408
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|50324857|gb|CO519983.1|CO519983
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|148958180|gb|EC904384.2|EC904384
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|20208181|gb|BQ134270.1|BQ134270
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|60352071|gb|DN219044.1|DN219044
EST:     CAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|19058330|gb|BM736997.1|BM736997
EST:     CGTTGCAATTCAAGCAG-GCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|19058159|gb|BM736826.1|BM736826
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGGTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|18964276|gb|BM660913.1|BM660913
EST:     CGTTGCAATTCAAGCAG-GCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|22473316|gb|BU037796.1|BU037796
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|148933752|gb|EC877683.2|EC877683
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|31353495|gb|CD437852.1|CD437852
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|31361791|gb|CD446148.1|CD446148
EST:     CGTTGCAATTCAAGCATTCCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|31664625|gb|CD573558.1|CD573558
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|22542092|gb|BU092530.1|BU092530
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|5566829|gb|AI881695.1|AI881695
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGGTCTCGACTCTGGTGATGGTGTGAGT-ACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|108953059|gb|EC364564.1|EC364564
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|211156552|gb|FL393684.1|FL393684
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGC-AGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGAT
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGAT
EST: gi|211199201|gb|FL385611.1|FL385611
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|211158138|gb|FL392766.1|FL392766
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|17921916|gb|BM259567.1|BM259567
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGGGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|31348896|gb|CD433253.1|CD433253
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|211471831|gb|FL184447.1|FL184447
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTG
EST: gi|148969649|gb|EE020509.2|EE020509
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|149030164|gb|EE286304.2|EE286304
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
EST: gi|20301358|gb|BQ164301.1|BQ164301
EST:     CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTG                         GTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG
genomic: CGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 32 (upstream exon), 34 (downstream exon)
Score: 2

GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG


Block sizes: 29 (upstream exon), 21 (downstream exon)
Score: 1

GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG


Block sizes: 49 (upstream exon), 30 (downstream exon)
Score: 2

GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctg ... caatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG
                 ggctgat  putative branch site (score: 2)
                       tgtttccgctttttta  CT-rich tract
                                ttttttattttctcaa  TA-rich tract