1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tggtccagaaaatataaatagcagcaaatattttcaatactaagttgagtatattactcctttacacctgactgaatgtaacactcatgaatgtttacagTGTCTTTCAGATATATTGGTTGAAAATGTGGGTATCCAGAAACTCCTCCTGAACAGTATCAATATTGGGGACGAG
species | Zea mays |
transcript | GRMZM2G110289_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAACTCTCAATTTATCTGGAAATGACATCGGGGATGAAGGAGCTAAG TGTCTTTCAGATATATEST: gi|18384684|gb|BM417883.1|BM417883
genomic: TGAAAACTCTCAATTTATCTGGAAATGACATCGGGGATGAAGGAGCTAAGgtcttttcaa ... atgtttacagTGTCTTTCAGATATAT
EST: GAAATGACATCGGGGATGAAGGAGCTAAG TGTCTTTCAGATATATTAGTTGAAAATGTGGGTATCCAGAAACTCCTCCTGEST: gi|18384683|gb|BM417882.1|BM417882
genomic: GAAATGACATCGGGGATGAAGGAGCTAAGgtcttttcaa ... atgtttacagTGTCTTTCAGATATATTGGTTGAAAATGTGGGTATCCAGAAACTCCTCCTG
EST: ATCGGGGATGAAGGAGCTAAG TGTCTTTCAGATATATTAGTTGAAAATGTGGGTATCCAGAAACTCCTCCTG
genomic: ATCGGGGATGAAGGAGCTAAGgtcttttcaa ... atgtttacagTGTCTTTCAGATATATTGGTTGAAAATGTGGGTATCCAGAAACTCCTCCTG
tgagtatattactcctttacacctgactgaatgtaacactcatgaatgtttacagTGTCTTTCAGATATATTGGTTGAAAATGTGGGTATCCAGAAACTCCTCCTGAACAGTATCAATATTGGGGACGAG
atgtaac putative branch site (score: 77)
atattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtccagaaaatataaatagcagcaaatattttcaatactaagttgagtatattactcctttacacctgactgaatgtaacactcatgaatgtttacagTGTCTTTCAGATATATTGGTTGAAAATGTGGGTATCCAGAAACTCCTCCTGAACAGTATCAATATTGGGGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - agaaaata
- - - - - - - - - - gcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg