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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggatttctaataaaggacattctttagcaatatgaacatttacttgttactcctttacaccgtctaataaattatacctgactattggtttataaacacatggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 4
gtaagttggatttctaataaaggacattctttagcaatatgaacatt--tacttgttactcctttacaccgt-ctaataaattatacctgactattggtttataaacacat-ggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG
||||| |  ||||   | ||||   |   ||| ||| | |||   ||  ||||   | ||  ||| | | ||  ||| ||||||  ||| |||  || ||||| ||  |||   | ||||||||||||||||||||||||||||||| || ||||| || || ||||| ||||||||||  |||
gtaagatttatttt--acaaagattaactttttgcagtgtgactgttagtactcactgcttattttctctgtgttaacaaatta--ccttactggtgctttatcaaatcatcaaaaaatagGGATCAAAGGCTACTGGTGCCTTCATTTTAACAGCTAGTCACAACCCTGGTGGTCCTACTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211183449|gb|FL327212.1|FL327212
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211399579|gb|FL345595.1|FL345595
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211464475|gb|FL313832.1|FL313832
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|30088269|gb|CB886474.1|CB886474
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211519065|gb|FL311544.1|FL311544
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCCTAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|8368954|gb|BE051899.1|BE051899
EST:     TGTCTACTCCTGCTGTATCTGCTGCCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCG
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211514341|gb|FL311514.1|FL311514
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211520184|gb|FL353420.1|FL353420
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGGCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211354596|gb|FL343940.1|FL343940
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211160953|gb|FL361295.1|FL361295
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|32921512|gb|CF026324.1|CF026324
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|148974651|gb|EE025449.2|EE025449
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211056237|gb|FL359926.1|FL359926
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211306566|gb|FL359152.1|FL359152
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|148951896|gb|EC897671.2|EC897671
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAAAATTGGTGGAGAT                         GGATCAAAGGGCTACTG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGG-CTACTG
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211258211|gb|FL352267.1|FL352267
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|28930952|gb|CB334313.1|CB334313
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211353999|gb|FL313767.1|FL313767
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCCAG-
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCC-AGG
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149109604|gb|EE190283.2|EE190283
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211157734|gb|FL360814.1|FL360814
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211149502|gb|FL328552.1|FL328552
EST:     TGNCTACTCCTGNTGNATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211472612|gb|FL331154.1|FL331154
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGNATCAA-GGCTACTGGTGCCTTTCATCT-GACAGCGAGCCATAACCCAG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGG-ATCAAAGGCTACTGGTGCCTT-CATCTTGACAGCGAGCCATAACCCAG
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 274

GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 289

GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 724

GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAGTTGGTGCAGATgtaagttgga ... tggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaccgtctaataaattatacctgactattggtttataaacacatggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG
                    acctgac  putative branch site (score: 724)
       tctaataaattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttggatttctaataaaggacattctttagcaatatgaacatttacttgttactcctttacaccgtctaataaattatacctgactattggtttataaacacatggacaatagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG