1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacaataacattttctttcatgttgtgtgttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCTTGACAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
species | Zea mays |
transcript | GRMZM2G109039_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|5510853|gb|AI857237.1|AI857237
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|60347828|gb|DN214801.1|DN214801
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|8368895|gb|BE051840.1|BE051840
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: AAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|20301188|gb|BQ164131.1|BQ164131
genomic: AAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|453303|gb|T15277.1|T15277
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|67012835|gb|CO441584.1|CO441584
genomic: GTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: TGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACEST: gi|20301181|gb|BQ164124.1|BQ164124
genomic: TGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAA-GGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTAC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|20300911|gb|BQ163854.1|BQ163854
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|20301275|gb|BQ164218.1|BQ164218
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCATGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|20300918|gb|BQ163861.1|BQ163861
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCEST: gi|26456084|gb|CA827667.1|CA827667
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
cttcccatcctctcttgttattcaacttatactgatgacaggcattgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCTTGACAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
tactgat putative branch site (score: 2)
ttattcaacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaataacattttctttcatgttgtgtgttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACCTTGACAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA