1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaacagcgcttttacttctgctctacctttttgctctgtgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCGGGTATAATCCCTACCATGGCTACCCTTATAGATCATATGGAGCACCGT
species | Zea mays |
transcript | GRMZM2G108919_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|9731847|gb|BE510599.1|BE510599
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|9731934|gb|BE510686.1|BE510686
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAATTAGCGTCCACCACGCEST: gi|6563947|gb|AW231569.1|AW231569
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGCEST: gi|7135303|gb|AW498018.1|AW498018
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|211270122|gb|FL340668.1|FL340668
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTEST: gi|50329632|gb|CO524758.1|CO524758
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACT
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGCCAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGCEST: gi|211177618|gb|FL479926.1|FL479926
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|60399607|gb|DN232418.1|DN232418
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|60351908|gb|DN218881.1|DN218881
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCEST: gi|89247954|gb|DY619740.1|DY619740
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
gaaatctcaacagcgcttttacttctgctctacctttttgctctgtgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCGGGTATAATCCCTACCATGGCTACCCTTATAGATCATATGGAGCACCGT
cctttttgctctgt CT-rich tract
ttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaacagcgcttttacttctgctctacctttttgctctgtgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGCGGGTATAATCCCTACCATGGCTACCCTTATAGATCATATGGAGCACCGT
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