1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagttctgttctgtttctgtccctttagctaaccacgtttgctactctgtgcttaacaataacaggatatccttttacttattttcagGTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAATCGCCCTGAAATTGACATTGGCCCAGAATTATCTCAATTGAAGGAATTCA
species | Zea mays |
transcript | GRMZM2G108739_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCACCAA GTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAATEST: gi|101394052|gb|EB818959.1|EB818959
genomic: AACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCACCAAgttagttctg ... ttattttcagGTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAAT
EST: AACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCACCAA GTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAAT
genomic: AACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCACCAAgttagttctg ... ttattttcagGTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAAT
cacgtttgctactctgtgcttaacaataacaggatatccttttacttattttcagGTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAATCGCCCTGAAATTGACATTGGCCCAGAATTATCTCAATTGAAGGAATTCA
caataac putative branch site (score: 2)
tccttttacttatttt putative PPT
ttttacttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctgttctgtttctgtccctttagctaaccacgtttgctactctgtgcttaacaataacaggatatccttttacttattttcagGTCATCACTAATGCATGTGCTACTCAAGCTATTCTCTCAGTTCTCATGAATCGCCCTGAAATTGACATTGGCCCAGAATTATCTCAATTGAAGGAATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA