Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatctttattatttatgtcgtcattatctgcaatctgaatgccttgaacacatatttgtcctctccacttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC

Basic information

species Zea mays
transcript GRMZM2G108739_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108739_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g57630.2 (Oryza sativa), 3'ss of exon 4
gtgagaatctttattatttatgtcgtcat---tatctgcaatctgaatgccttgaacacatatttgtcctctccacttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC
|||||  |||| | | ||| ||| |||||   | ||||   |||| ||| | | |||||||  ||||||     |||| || ||||||||| |||||||||||||||||||||||||||||  | ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||   |
gtgagtctcttcaattttt-tgttgtcatgcgtctctgttctctggatggccttaacacattgttgtcc-----acttctcatagGCCAGTTTATGGGCTAATTTTTCTCTTCAAGTGGATGGCTGGGGAAAAGGATGAACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGC

upper sequence: GRMZM2G108739_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g57630.3 (Oryza sativa), 3'ss of exon 4
gtgagaatctttattatttatgtcgtcat---tatctgcaatctgaatgccttgaacacatatttgtcctctccacttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC---
|||||  |||| | | ||| ||| |||||   | ||||   |||| ||| | | |||||||  ||||||     |||| || ||||||||| |||||||||||||||||||||||||||||  | ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||   |   
gtgagtctcttcaattttt-tgttgtcatgcgtctctgttctctggatggccttaacacattgttgtcc-----acttctcataggccagTTTATGGGCTAATTTTTCTCTTCAAGTGGATGGCTGGGGAAAAGGATGAACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71437430|gb|DR818480.1|DR818480
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|37361488|gb|CF602777.1|CF602777
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18649335|gb|BM498154.1|BM498154
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|19058669|gb|BM737336.1|BM737336
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18450451|gb|BM428729.1|BM428729
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|32936153|gb|CF040965.1|CF040965
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|32937762|gb|CF042581.1|CF042581
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18649482|gb|BM498301.1|BM498301
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18649277|gb|BM498096.1|BM498096
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTATCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18450400|gb|BM428678.1|BM428678
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGCCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211120940|gb|FL408170.1|FL408170
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211288445|gb|FL410142.1|FL410142
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|5055707|gb|AI734594.1|AI734594
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|31664378|gb|CD573103.1|CD573103
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211490322|gb|FL377881.1|FL377881
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211132915|gb|FL391880.1|FL391880
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211156337|gb|FL380332.1|FL380332
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|30306470|gb|CD001143.1|CD001143
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211102481|gb|FL395954.1|FL395954
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|93013476|gb|EB638996.1|EB638996
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTT-AAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211392419|gb|FL378726.1|FL378726
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|19822579|gb|BQ048603.1|BQ048603
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|76929348|gb|DV171972.1|DV171972
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18649532|gb|BM498351.1|BM498351
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211045017|gb|FL382448.1|FL382448
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211474315|gb|FL411624.1|FL411624
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18650000|gb|BM498819.1|BM498819
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18450596|gb|BM428874.1|BM428874
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|18649234|gb|BM498053.1|BM498053
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|78092543|gb|DV520917.1|DV520917
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|78084624|gb|DV513017.1|DV513017
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211491468|gb|FL425155.1|FL425155
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|19822485|gb|BQ048509.1|BQ048509
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
EST: gi|211201385|gb|FL369966.1|FL369966
EST:     GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCG                         GCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA
genomic: GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 430

GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 224

GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 336

GTGGAAGAGCTTTACTCTCTCGATGTGGGCTCTCTTAGTCAACTGCGgtgagaatct ... cttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatctgcaatctgaatgccttgaacacatatttgtcctctccacttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC
                              tatttgtcctctccac  CT-rich tract
                           acatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaatctttattatttatgtcgtcattatctgcaatctgaatgccttgaacacatatttgtcctctccacttttcttagGCCAGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC