Sequence
atgc intronic sequence ATGC exonic sequencegtgtgagagatttgtgagttgactcactttttaagcattccatcttctgtcaatactggtttagttgaagactcatgattattaattgttttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 3'ss of exon 4
gtgtgagagatttgtgagttgactcactttttaagcattccatcttctgtcaatactg-gtttagttgaagactcatgattattaattgt-tttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
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gtgtgagatatttgtgagtttactcacttgttcaatttt---tctttcgtcgaccatgtgattctctgttaacaccagtttattcactttgtttgtagTGCTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATTAATGCAAGCATG
upper sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 4
---gtgtgagagatttgtgagttgactcactttttaagcattccatcttctgtcaatactggtttagttgaagactcatgattattaat-----tgtt-ttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
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tttctaaaaactattttcaagtgagatagcacc---actgatttacacattg--attaattattcagttattggtgcatgattggtaaaatatgtgttattgcagTGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATG
upper sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 4
---gtgtgagagatttgtgagttgactcactttttaagcattccatcttctgtcaatactggtttagttgaagactcatgattattaat-tgtt-ttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
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tttttctaaactattttcaagtgagatagcaccactgat-ttacacattgtttgattattcaattattggtgcatgattggtaaaatatgtgttattgcagTGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATG
upper sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgagaga----------tttgtgagttgactcactttttaagcattccatcttctgtcaatactggtttagttgaagactcatgattattaattgttttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
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gtgagaaaaaaacattattttttcttaacttgcacaattttttt-cactcaaatttatatccagaata---tagcatggatatcacccttcatatttgcct-gcagTGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATG
upper sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------gtgtgagagatttgtgagttgactcactttttaagcattccatcttctgtcaatactggtttagttgaagactcatgattatta--attgttttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
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gtttgccgcagttatttcatagttgatgtt-gagtttttcttattga-tagctttggaaccttcatatggcatatcc-cactactttcat-gagcatcaatgttaactatggtatgtctgcagTGTTTTATAGTGAGCACAGTTAATGCTTTGCAGACACCAATGATCAATGCGAGCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149086469|gb|EE176014.2|EE176014EST: CTCACAAGTTCATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCTGAG TGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCA
genomic: CTCGCAAGTTCATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCTGAGgtgtgagaga ... tgttttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcttctgtcaatactggtttagttgaagactcatgattattaattgttttgtagTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG
tattaat putative branch site (score: 2)
ttgtttt CT-rich tract
atgattattaattgtt TA-rich tract