1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatgcagaatatgtacttgaagttttatttttttatatatttttgtcagatattactttagtaaatagccttgtggtaaataactatattttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCAAAATTTATATGCAAAGAG
species | Zea mays |
transcript | GRMZM2G108225_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|61119737|gb|DN560698.1|DN560698
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|148959751|gb|EC905647.2|EC905647
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|74240348|gb|DT648262.1|DT648262
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|149000700|gb|EE037914.2|EE037914
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|148941371|gb|EC886282.2|EC886282
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|85152394|gb|DW587719.1|DW587719
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCCCTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|148954555|gb|EC899993.2|EC899993
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|149010292|gb|EE042121.2|EE042121
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|211235615|gb|FL131351.1|FL131351
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCEST: gi|148940819|gb|EC885646.2|EC885646
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
EST: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGG TTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
genomic: ATGGATAAGTTTCGCCACGTATCCACTGCCTTCCTGGAGCTTGGTGAAGGgtaactttat ... ttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGC
tcagatattactttagtaaatagccttgtggtaaataactatattttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCAAAATTTATATGCAAAGAG
aaataac putative branch site (score: 130)
ttttgttttc putative PPT
taaataactatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgcagaatatgtacttgaagttttatttttttatatatttttgtcagatattactttagtaaatagccttgtggtaaataactatattttgttttcagTTACCAAAAGGCAATAGAAGAAGTCACTAGGCGAATGGGTGCAGGAATGGCAAAATTTATATGCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
aatgcag
- - - - atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac