1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtggtcaaggttgtttatcatatactgtaagtgtttgcaagaagaattagtctttgcgagatgggattgatttgcttgcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGGACAAAGAGTTATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAG
species | Zea mays |
transcript | GRMZM2G107731_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|78116277|gb|DV534664.1|DV534664
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|149081200|gb|EE170309.2|EE170309
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGEST: gi|91874738|gb|EB404695.1|EB404695
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCCAAACGCAAGGTCATCAAGCATAGCAAGCTTGAAAAGEST: gi|149027108|gb|EE046399.2|EE046399
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCAAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|148994670|gb|EE034191.2|EE034191
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|148937207|gb|EC881388.2|EC881388
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|148961119|gb|EE011825.2|EE011825
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|149103903|gb|EE289318.2|EE289318
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GTGGTCAAGGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGEST: gi|50326867|gb|CO521993.1|CO521993
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagG-GG--A-G-----CGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGEST: gi|71774542|gb|DR972420.1|DR972420
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGEST: gi|149071351|gb|EE159746.2|EE159746
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGEST: gi|31354731|gb|CD439088.1|CD439088
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGEST: gi|60358220|gb|DN225193.1|DN225193
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGGTGGTCAAGEST: gi|91055771|gb|EB166189.1|EB166189
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATC--AA-------AAGgtggtcaagg ... gc
EST: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAG GGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
genomic: TGAAGGAAAATCGTGCATCAGAGCAAGTGGGCGCTCCAAGTGATCAAAAGgtggtcaagg ... gcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAG
gtttgcaagaagaattagtctttgcgagatgggattgatttgcttgcttttgtagGGGAGCGGTGAGCCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGGACAAAGAGTTATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAG
gattgat putative branch site (score: 41)
cttgctttt putative PPT
aagaatta TA-rich tract