1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactgcctgagccatcctggtagcttattcaacttgtggtggctacaaactctactgaacaactaactgccgttatctttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAGCAAAGAAGAAAGGGTCCAGCAACAAGTCTACTGATCTGATGAATGGCA
species | Zea mays |
transcript | GRMZM2G107495_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAEST: gi|87154376|gb|DY399165.1|DY399165
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAEST: gi|74236631|gb|DT644545.1|DT644545
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAEST: gi|8665438|gb|BE186254.1|BE186254
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAEST: gi|12047355|gb|BF729494.1|BF729494
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAEST: gi|21480736|gb|BQ577419.1|BQ577419
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
EST: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAAT GTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
genomic: ACAGGTCAAGCAGCTCTGCTGCTGCTCTGGCACATGTGAAAAATGCAAATgtactgcctg ... ttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACA
ttgtggtggctacaaactctactgaacaactaactgccgttatctttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAGCAAAGAAGAAAGGGTCCAGCAACAAGTCTACTGATCTGATGAATGGCA
aactaac putative branch site (score: 21)
ttatcttt putative PPT
ttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcctgagccatcctggtagcttattcaacttgtggtggctacaaactctactgaacaactaactgccgttatctttgtcagcagGTGAGCTCCTTCTCCTTTGGAAAGGCCGACATGGACAGCACAGTGAAAACAGCAAAGAAGAAAGGGTCCAGCAACAAGTCTACTGATCTGATGAATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA