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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttttcttgccagttacatgtcctcttctacatatgtctgtttgttttgctgaaaaggagtctactttacttttgtagAATGAAAAGGAGTGTGCGTATTATTTAAAAACAGGACAATGTAAATATGCAAATACTTGTAAATTCCACCACCCAGAACTTTTCAATGTGGTGCCTTCGT

Basic information

species Zea mays
transcript GRMZM2G107491_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107491_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
gtttgttttttcttgcca------gttacatgtcct-cttctacata----tgtctgtttgttttgctgaaaaggagtctactttacttttgtagAATGAAAAGGAGTGTGCGTATTATTTAAAAACAGGACAATGTAAATATGCAAATACTTGTAAATTCCACCACCCAGAACTTTTCAATGTGGTGCCTTCGT
||||||  ||| ||||         | |  || ||| | | |  |||      ||| |||| | | |||||  | |||||  ||| ||| |||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||  ||||| |||||||| ||||| ||||||||||||||||   || |||| |
gtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctg-tttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctacatatgtctgtttgttttgctgaaaaggagtctactttacttttgtagAATGAAAAGGAGTGTGCGTATTATTTAAAAACAGGACAATGTAAATATGCAAATACTTGTAAATTCCACCACCCAGAACTTTTCAATGTGGTGCCTTCGT
                                     tctactttactttt  CT-rich tract
                                          tttactttt  TA-rich tract