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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgccgctgcaacaaatctggtaccccttttccctttttgctgtccagaatgttattcaaccaatgttcgtcttaaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA

Basic information

species Zea mays
transcript GRMZM2G107473_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107473_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g27010.1 (Oryza sativa), 3'ss of exon 4
gtatttgccgctgcaacaaatctggtaccccttttccctttttgctgtccagaatgttattcaaccaatgttcgtcttaaacaa-cagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA
          |||| ||     || | ||    |||  ||| ||    |   ||||  ||  ||| |||    ||  |   ||| ||||  |||| |||||||||||| || |||||||||||||||  | | || || |||| ||||||||| ||||||||  ||| ||| ||||| |||||| |||
-------gtactgctacctgcttgtt-ccttcattcgatttatgtgtcctgaaatgcaatctaacaaataactgttctcctcaaacagGTGAGCAGCTTCTCGTTTGGGGAGGCCAACACTGACAGCGTGACGAAAACTGCAAAGAAGATAACTGGCAAGAAATTCACCGATCTCACAGGCAACAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350972|gb|DN217945.1|DN217945
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32863293|gb|CF002975.1|CF002975
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|4646524|gb|AI491669.2|AI491669
EST:     ACCCATCGAACGGCAGCNCAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|93011847|gb|EB637367.1|EB637367
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|5080976|gb|AI738238.1|AI738238
EST:     ACCCATCGAACGGCAGCNCAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|211103381|gb|FL434749.1|FL434749
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCGAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|60341727|gb|DN208700.1|DN208700
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|211089736|gb|FL031842.1|FL031842
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGNCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|4885801|gb|AI676921.1|AI676921
EST:     ACCCATCGAACGGCAGCNCAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACCCTGACAGCCCGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|5018338|gb|AI714531.1|AI714531
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|60394416|gb|DN227286.1|DN227286
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|211089737|gb|FL031843.1|FL031843
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCCAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32863292|gb|CF002974.1|CF002974
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|148956750|gb|EC902632.2|EC902632
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|5919390|gb|AW054487.1|AW054487
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACGCTGACAGCACCGC-AAAGAC
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCAC-GCCAAAGAC
EST: gi|71441673|gb|DR822723.1|DR822723
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|78119351|gb|DV537735.1|DV537735
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|30088276|gb|CB886481.1|CB886481
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|6952621|gb|AW424689.1|AW424689
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCACCACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32836239|gb|CD975917.1|CD975917
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|60355889|gb|DN222862.1|DN222862
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32824234|gb|CD963956.1|CD963956
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|37375801|gb|CF624366.1|CF624366
EST:     ACCCATCGTAGGGCAGCACAGCCTCACACGCACTTGCCAAAAATACAAAC                         GCGAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32839114|gb|CD978795.1|CD978795
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|74241683|gb|DT649597.1|DT649597
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|76020807|gb|DT947977.1|DT947977
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTTTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|71427076|gb|DR808126.1|DR808126
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|88756067|gb|DY540208.1|DY540208
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCTTTTGGGGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|93015784|gb|EB641304.1|EB641304
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|6952631|gb|AW424699.1|AW424699
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|29544811|gb|CB605419.1|CB605419
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|149100759|gb|EE186853.2|EE186853
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|88747245|gb|DY531386.1|DY531386
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTTTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|78091925|gb|DV520299.1|DV520299
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTTTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|5932677|gb|AW057038.1|AW057038
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|211172601|gb|FL481190.1|FL481190
EST:     ACTCATCGAATGGCAGCGCAGCYTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|6695470|gb|AW288578.1|AW288578
EST:     ACCCATCGAACGGCAGCCCAGCCTCNCACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGNCAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|86467471|gb|DY233841.1|DY233841
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|32839001|gb|CD978682.1|CD978682
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|60355776|gb|DN222749.1|DN222749
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
EST: gi|60355508|gb|DN222481.1|DN222481
EST:     ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAAC                         GCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG
genomic: ACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 124

CCACGACATCTTTGCTGATACTCTGGATTCCAGGTCTAACAGGGCAAGGAACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 55

CCACGACATCTTTGCTGATACTCTGGATTCCAGGTCTAACAGGGCAAGGAACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 32

CCACGACATCTTTGCTGATACTCTGGATTCCAGGTCTAACAGGGCAAGGAACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 80

CCACGACATCTTTGCTGATACTCTGGATTCCAGGTCTAACAGGGCAAGGAACCCATCGAACGGCAGCACAGCCTCACACGCACCTGCCAAAAATACAAACgtatttgccg ... taaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccctttttgctgtccagaatgttattcaaccaatgttcgtcttaaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA
                                      ttcgtctt  CT-rich tract
                    aatgttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttgccgctgcaacaaatctggtaccccttttccctttttgctgtccagaatgttattcaaccaatgttcgtcttaaacaacagGCCAGCACCTTCTCGTTTGGAGATGCCAACACTGACAGCACGCCAAAGACGGCAAGGAAGATAACCGGCAAGAAGGTCAACGACCTCACCGGCAACGACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG