1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttcgctagctgtgttttctagattatttccataaattcctgactttctgtctatcaacttgtggaaattattgttgaactgatgtatggtacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAG
species | Zea mays |
transcript | GRMZM2G107309_T07 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG CAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCEST: gi|6564072|gb|AW231694.1|AW231694
genomic: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGgtaaatagca ... tacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGC
EST: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG CAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCEST: gi|78112912|gb|DV531306.1|DV531306
genomic: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGgtaaatagca ... tacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGC
EST: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAG C---TAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGC
genomic: CAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGgtaaatagca ... tacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGC
ttctgtctatcaacttgtggaaattattgttgaactgatgtatggtacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAG
aactgat putative branch site (score: 3)
aaattattgttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcgctagctgtgttttctagattatttccataaattcctgactttctgtctatcaacttgtggaaattattgttgaactgatgtatggtacttactagCAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - tgtgttt
- - - - - - - - - - - - - - - - - -attcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg