Sequence
atgc intronic sequence ATGC exonic sequencegtaatacaaactccttatggacaattgtcaggaaactcaagaaagaatctaacatatcatttttaattgcattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g08700.1 (Oryza sativa), 3'ss of exon 5
gtaatacaaactccttatggacaattgt----caggaaactcaagaaagaatctaacatatcatttttaattgcattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
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gtaatttgatccagtgatcaatacatgttccacaaacaattgaagaaagagtttgacatatttttctca----tatt-tccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGATTCTGTCACGCATCATAGATGGGACACTCAGTTATGATAGAAATGGTTT
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
-------------------------------gtaatacaaactccttatggaca--attgtcagga---aactcaagaaagaatctaacatatcatttttaattgcat-tgta----cagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
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gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 4
----------------------gtaatacaaactcc--ttatggacaattgtcaggaaactcaagaaagaatct------aacatatcattt--ttaattgcat---tgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC--------------------------
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gtatagggtatttttgctttacttagtattagtttcaattatgatttactcaacagtaacttatgactatttcttgtccaaataactaatttattcattcacatgtacatccagcggtacttgttcttcatcatccagagCACGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACGCTGGACTATGATAAGACTAGTCCTCCATTTGCTTCTTTCATTTCTTTAG
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtaatacaaactccttatggacaattgtcaggaaactcaagaaagaatctaacatatcatttttaattgcattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
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gtatgatcaacatttatgatccacacttctctttttgtgtgtgaatg--tctatctgattttcgttttctg-atgaaacagCGATGTTTGTCCTTCATCATCCGGAGCATGGTCATGCAGTCATTCTTCCAATCATTTCATGTCTTATTGATGGCTCGTTGGTGTACAGCAAGGAAGCTCA
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------gtaatacaaactccttatggacaattgtcaggaaactcaagaaagaatctaacatatcatttttaattg----cattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
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gtattcatgtttttcaatgttgatatacctaaaaattgatataag-ttattattccctaatat--gaattttctatcaactgcatagtgacttccttataattaaaatcaattttcagCAACGTTTGTTCTTCATCATCCGGAACATGGGCATGCTGTCGTTCTTCCAATTATTTCGTGTATCATTGATGGTACACTGGTGTATGATAGGTGTACTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32942831|gb|CF047650.1|CF047650EST: TCAAAGTTCCTATCCATCAAAAGAAAATCGCTTGGTAGATGAAGTATTGG CAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAA
genomic: TCAAAGTTCCTATCCATCAAAAGAAAATCGCTTGGTAGATGAAGTATTGGgtaatacaaa ... cattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtcaggaaactcaagaaagaatctaacatatcatttttaattgcattgtacagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC
aaagaatctaacatat TA-rich tract