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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGGTGAGGCAACAATACTTGACCCTTCATATATATA

Basic information

species Zea mays
transcript GRMZM2G106795_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106795_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g47110.1 (Oryza sativa), 3'ss of exon 4
gtctg-tagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGGTGAGGCAACAATACTTGACCCTTCATATATATA
|| |  ||   | |   | ||   |||| |||    |  ||   || || |   ||| |||  ||       | |||||||||||||  | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||                                  
gtttaataagctattt-taagttatgctcatcagatagcttgccttgtt-agtgaagctaaggtttggtggctttgttgcagGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241061|gb|DT648975.1|DT648975
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCC
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCC
EST: gi|101398288|gb|EB821017.1|EB821017
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCCTTTCCTGCTTAACAGTGTCATATTGGTATTTGCC
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCC
EST: gi|211076278|gb|FL377992.1|FL377992
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCCTTTCATGCTTAACA
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACA
EST: gi|211066463|gb|FL305323.1|FL305323
EST:     TGATTCATTGGATCGGGAGAGGATTGGAAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATG
genomic: TGATTCATTGGATCGGGAGAGGATTGGAAAA-GCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATG
EST: gi|211497259|gb|FL426008.1|FL426008
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGAT
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGAT
EST: gi|211066466|gb|FL305326.1|FL305326
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCC
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCC
EST: gi|211066462|gb|FL305322.1|FL305322
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCCTTT
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCCTTT
EST: gi|211069202|gb|FL305332.1|FL305332
EST:     TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAG                         GCAATAATCAATGATCC
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... tctgttgcagGCAATAATCAATGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcagGCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGGTGAGGCAACAATACTTGACCCTTCATATATATA
                            agttaat  putative branch site (score: 4)
                                            ttctgtt  putative PPT
         aatttaatttcttcaa  TA-rich tract