Sequence
atgc intronic sequence ATGC exonic sequencegttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacggtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G106513_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 3'ss of exon 3
gttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacg-gtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
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---------------------------------------------------------------------------------------ctattttgggacgga---ggaagtactacattatttgcccctctttttcctttcgtctatgttg-agagatatatttatgaggaatttcatgctttgttttcagTGTGAAATGACAGGTGTTGTAGTCGATGTGGGTGATGGGGCTACCCACATTGTTCCTGTTGCTGATGGTTATGTTATAGGAAGCAGCATCAGATCAATTC
upper sequence: GRMZM2G106513_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacggtttccc-ttctttgttgagcgatcatcacactcttata--tttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
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-------------------------------------------------------------------------------------------gctttgtgggatttagcaaatattaaacatgttctcttgttttttgttctgtc-tcgttatgctcgcctcgcctcttaatttgacttacaattc-ttcttagTGTGAGATGACAGGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTATGTCATCGGGAGCTGTATCAAATCGATTC
upper sequence: GRMZM2G106513_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 2
gttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacggtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
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---------------------------------------------------------------------------------------ttgtcttaaagtgtaccttgcttcttatgtaaataatttttcttgctctttga-tgattgattgacccttgccttttagattaacct-acacttt-cccttagTGTGAGATGACAGGGGTTGTAGTGGATGTTGGGGATGGGGCTACTCATGTTGTACCTGTTGCAGATGGTTATGTTATTGGGAGCAGCATTAAGTCAATTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
ttttgttttc CT-rich tract
ttatatttatgagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacggtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcagTGTGAAATGATAGGTGTTGTAGTTGATGTGGGTGATGGGGCTACCCATATTGTTCCGGTTGTTGATGGTTATGTCATTGGGAGCAGTATCAGATCTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG